Prediction Algorithm for proteasomal cleavages

Prediction Algorithm for Proteasomal Cleavages

PAProC's location within the MHC class I antigen processing pathway.

Link collection

Home of PAProC:

Department of Immunology , University of Tübingen
Department of Biomathematics , University of Tübingen

Other prediction tools:

SYFPEITHI - a database of MHC ligands and peptide motifs
NetChop Prediction Server - neural network predictions for cleavage sites of the human proteasome
MAPPP - Combined proteasome cleavage and MHC ligand prediction

Other interesting links:

Yeast proteasome ( http://www.uni-stuttgart.de/ibc/wolf/proteasome.html and http://biochem13.chemie.uni-stuttgart.de/~wohi/pstruc.html )
Yeast proteasome crystal structure ( http://www.biochem.mpg.de/xray/projects/hubome/ypr.html )
Structures of the yeast proteasome, ubiquitin and related enzymes (http://cbweb.med.harvard.edu/research/finley/Labpage/structure/yeastprot.html)
Procaryotic proteasome structures ( http://delphi.phys.univ-tours.fr/Prolysis/proteasome.html )
Collection of information on proteasomes ( http://www.proteasome.de/ )
Nice Polish web site on proteasomes with pictures and links (http://www.ib.amwaw.edu.pl/home/cwojcik/proteas.htm)
More images of bacterial 20S proteasomes (http://grove.ufl.edu/~jmaupin/maupin/20S_model.html )
3D structures of proteasomes - plugin needed ( http://www.bio.ph.ic.ac.uk/molbio/mols/proteasome/prot.fr.html)
The yeast 26S proteasome - nomenclature, picture and genes ( http://www.med.uni-muenchen.de/biochemie/feldmann/proteasome_units.html)
Information on the ubiquitin-proteasome pathway of protein degradation (http://www.bostonbiochem.com/upp.html )
Proteasome structures (http://www.biologie.uni-hamburg.de/lehre/bza/1pma/e1pmae.htm )
A Tübingen company selling purified proteasomes ( http://www.immatics.com )
Companies selling proteasome research products (http://www.proteasomes.com/ and http://www.zomes.com/)
BioResearch is a gateway to internet resources in the basic biological and biomedical sciences, based at the University of Nottingham ( http://bioresearch.ac.uk/browse/mesh/detail/C0026741L0026741.html )
A company's large collection of web-based tools for the prediction and analysis of protein epitopes ( http://www.epitope-informatics.com/Links.htm )
A list of links to bioinformatics sites, based at the University of Ulm, Germany ( http://www.uni-ulm.de/~s_jhaken/bioinformatics/links.html )
Notes on antigen presentation in John Kimball's online biology textbook ( http://www.ultranet.com/~jkimball/BiologyPages/A/AntigenPresentation.html )
Nature journal's comprehensive collection of links to immunology websites ( http://www.nature.com/nri/info/links.html )

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Last update: 13.4.2005